Glyma12g33820 - SoyBase

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Report for Sequence Feature Glyma12g33820

Feature Type:	gene_model
Chromosome:	Gm12
Start:	36995958
stop:	37002473
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g33820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42600	AT	Annotation by Michelle Graham. TAIR10: phosphoenolpyruvate carboxylase 2 \| chr2:17734541-17738679 REVERSE LENGTH=963	SoyBase	E_val: 0	ISS
GO:0006099	GO-bp	Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle	SoyBase	N/A	ISS
GO:0015977	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbon fixation	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008964	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoenolpyruvate carboxylase activity	SoyBase	N/A	ISS
PF00311	PFAM	Phosphoenolpyruvate carboxylase	JGI		ISS
UniRef100_Q6Q2Z8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phosphoenolpyruvate carboxylase n=1 Tax=Glycine max RepID=Q6Q2Z8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6Q2Z8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphoenolpyruvate carboxylase n=1 Tax=Glycine max RepID=Q6Q2Z8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g33820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g33820

Paralog	Evidence	Comments
Glyma13g36670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g33820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g210600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g33820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g33820

Limit To All Plant Sequences

>Glyma12g33820.1   sequence type=CDS   gene model=Glyma12g33820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTCGTAACATCGAGAAGATGGCCTCAATTGATGCTCAACTGAGGTTGCTGGCGCCACGCAAGGTGTCTGATGATGACAAACTCGTTGAGTATGATGCCTTGTTGTTGGATCGTTTCCTTGACATTCTTCAGGATTTGCATGGTGAAGATATCAGACAAACGGTCCAAGATTGTTACGAGCTGTCAGCTGAGTACGAAGGAGAGCATAAGCCTGAAAAGTTGGAGGAACTTGGGAATATGCTGACGGGTCTTGATGCTGGGGATTCAATTGTTATTGCCAAGTCATTTTCTCACATGCTCAATTTGGCCAACTTGGCAGAAGAAGTTCAAATTGCGTATCGAAGAAGGATCAAGTTACTGAAGAAGGGTGATTTTGCTGATGAGAACTCTGCCATTACTGAGTCAGACATTGAAGAGACCTTCAAGAAGCTTGTGGCTCAACTGAAGAAGACACCCCAGGAAATCTTTGATGCTTTGAAGAACCAAACTGTGGATTTGGTTCTAACTGCTCATCCTACTCAGTCTGTTCGCAGATCTTTGCTGCAAAAGCATGGAAGGATAAGGAATTGTTTGACACAATTATATGCTAAGGACATAACACCAGATGATAAGCAGGAACTTGATGAGGCTTTACAAAGAGAGATTCAAGCTGCATTTCGCACAGATGAAATTCGAAGGACTCCTCCTACCCCACAAGATGAGATGAGGGCAGGAATGAGCTACTTTCATGAGACAATTTGGAAAGGTGTACCACAGTTTCTGCGTCGGGTAGATACAGCTCTGAAGAACATTGGAATTAATGAACGTGTCCCATATAATGCTCCTGTTATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGGTAATCCTAGAGTAACCCCTGAAGTTACAAGGGATGTGTGTTTGCTGGCTAGAATGATGGCTGCTAATATGTACTTCTCTCAGATAGAGGATCTCATGTTTGAGTTGTCTATGTGGCGTTGCACTGACGAGCTACGTGTTCGTGCTCATGAACTCCATAGGTCCTCAAAGAGAGATGCAAAACATTATATTGAGTTTTGGAAACAGATTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCAGAGACAAACTATATAACATTCGGGAACGTGCTCGCCATTTATTAGCCAATGGGACATCTGATATCCCTGAGGAGACAACCTTCACTAACGTTGAGCAGTTTCTGGAGCCCCTTGAACTATGCTACAGGTCACTCTGTGCATGTGGTGACAGACCAATAGCAGATGGAAGCCTCCTTGATTTCCTGCGGCAAGTTTCCACATTTGGACTCTCACTAGTGAGACTTGACATCCGTCAAGAGTCAGATAGGCACACTGATGTTATGGATGCAATCACAAAACACTTAGACATTGGATCATACCGAGAGTGGCCCGAGGAAAAGAGGCAGGAGTGGCTCTTGTCTGAACTCAGTGGAAAGCGCCCTCTCTTTGGCCATGACCTTCCCAAAACAGAAGAAATCACCGATGTTTTGGAAACATTCCGTGTCATTTCAGAGCTTCCCTCAGACAACTTCGGTGCCTACATCATATCAATGGCAACATCCCCATCTGATGTGCTTGCTGTTGAGCTTTTACAACGTGAATGCCATGTGAAGCAGCCACTAAGGGTGGTGCCACTGTTTGAAAAGCTTGCTGATCTTGAGGCCGCTCCGGCTGCGGTGGCACGTCTTTTCTCTATAGATTGGTACAGAAACCGCATTGATGGGAAGCAAGAAGTTATGATAGGGTACTCAGACTCAGGAAAAGATGCAGGCCGTCTTTCTGCGGCTTGGGCGCTTTACAAGGCTCAAGAAGAACTTGTGAAGGTTGCTAAGGAGTATGGTGTTAAACTTACAATGTTTCATGGGAGAGGAGGGACTGTTGGAAGAGGAGGAGGTCCAACTCATCTTGCTATATTGTCTCAGCCACCAGACACCATTCATGGCTCACTTCGGGTAACGGTTCAGGGTGAAGTCATTGAGCAGTCTTTTGGAGAGGAACACTTGTGCTTTAGAACACTTCAGCGCTTCACTGCAGCTACACTTGAGCATGGCATGCATCCTCCTGTGTCACCGAAACCCGAATGGCGTGCCCTCATGGATGAAATGGCTGTCATTGCAACAAAGGAGTATCGCTCTGTTGTTTTCAAAGAACCTCGTTTTGTTGAATATTTCAGATGTGCAACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCAAAGCGAAAGCCAAGTGGAGGAATTGAATCACTACGTGCTATTCCTTGGATTTTTGCATGGACACAAACGAGGTTTCATTTGCCAGTGTGGCTTGGTTTTGGGTCAGCATTTAAGCATGTAGTTGAGAAAGATCCGAAGAATCTCCAAATGCTTCAGGACATGTACAATCAATGGCCTTTCTTCAGGGTCACCCTGGACTTGGTTGAGATGGTGTTTGCTAAGGGAGACCCGGGGATTGCAGCCCTATTTGACAAACTCCTAGTATCAGAAGAGCTGCGTCCATTTGGAGAAAATTTAAGAGCTAAATACGAAGAAACCAAGAGCTTTCTCCTCCAGGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTCGTCTTCGTGACTCATACATCACAACCCTCAATGTGTTGCAAGCTTACACATTGAAGCGAATTCGTGATCCTGACTACCATGTGAAGTTGAGGCCACACTTGTCAAAGGACTACATGGAATCAAGCAAGCCAGCAGCAGAGCTTGTTAAACTTAACCCCAAAAGCGAGTATGCTCCTGGTCTTGAGGACACCCTTATTTTGACAATGAAGGGTATTGCTGCTGGAATGCAAAATACCGGTTAA

Predicted protein sequences of Glyma12g33820

Limit To All Plant Sequences

>Glyma12g33820.1   sequence type=predicted peptide   gene model=Glyma12g33820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAARNIEKMASIDAQLRLLAPRKVSDDDKLVEYDALLLDRFLDILQDLHGEDIRQTVQDCYELSAEYEGEHKPEKLEELGNMLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAITESDIEETFKKLVAQLKKTPQEIFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPQFLRRVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFELSMWRCTDELRVRAHELHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNIRERARHLLANGTSDIPEETTFTNVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLDIGSYREWPEEKRQEWLLSELSGKRPLFGHDLPKTEEITDVLETFRVISELPSDNFGAYIISMATSPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYRNRIDGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELVKVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSVVFKEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGSAFKHVVEKDPKNLQMLQDMYNQWPFFRVTLDLVEMVFAKGDPGIAALFDKLLVSEELRPFGENLRAKYEETKSFLLQVAGHKDILEGDPYLKQRLRLRDSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDYMESSKPAAELVKLNPKSEYAPGLEDTLILTMKGIAAGMQNTG*

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